Path optimization by a variational reaction coordinate method. I. Development of formalism and algorithms.
نویسندگان
چکیده
The development of algorithms to optimize reaction pathways between reactants and products is an active area of study. Existing algorithms typically describe the path as a discrete series of images (chain of states) which are moved downhill toward the path, using various reparameterization schemes, constraints, or fictitious forces to maintain a uniform description of the reaction path. The Variational Reaction Coordinate (VRC) method is a novel approach that finds the reaction path by minimizing the variational reaction energy (VRE) of Quapp and Bofill. The VRE is the line integral of the gradient norm along a path between reactants and products and minimization of VRE has been shown to yield the steepest descent reaction path. In the VRC method, we represent the reaction path by a linear expansion in a set of continuous basis functions and find the optimized path by minimizing the VRE with respect to the linear expansion coefficients. Improved convergence is obtained by applying constraints to the spacing of the basis functions and coupling the minimization of the VRE to the minimization of one or more points along the path that correspond to intermediates and transition states. The VRC method is demonstrated by optimizing the reaction path for the Müller-Brown surface and by finding a reaction path passing through 5 transition states and 4 intermediates for a 10 atom Lennard-Jones cluster.
منابع مشابه
Contour Crafting Process Plan Optimization Part I: Single-Nozzle Case
Contour Crafting is an emerging technology that uses robotics to construct free form building structures by repeatedly laying down layers of material such as concrete. The Contour Crafting technology scales up automated additive fabrication from building small industrial parts to constructing buildings. Tool path planning and optimization for Contour Crafting benefit the technology by increasin...
متن کاملFinding the Shortest Hamiltonian Path for Iranian Cities Using Hybrid Simulated Annealing and Ant Colony Optimization Algorithms
The traveling salesman problem is a well-known and important combinatorial optimization problem. The goal of this problem is to find the shortest Hamiltonian path that visits each city in a given list exactly once and then returns to the starting city. In this paper, for the first time, the shortest Hamiltonian path is achieved for 1071 Iranian cities. For solving this large-scale problem, tw...
متن کاملPrimal-dual path-following algorithms for circular programming
Circular programming problems are a new class of convex optimization problems that include second-order cone programming problems as a special case. Alizadeh and Goldfarb [Math. Program. Ser. A 95 (2003) 3-51] introduced primal-dual path-following algorithms for solving second-order cone programming problems. In this paper, we generalize their work by using the machinery of Euclidean Jordan alg...
متن کاملLinear Time Varying MPC Based Path Planning of an Autonomous Vehicle via Convex Optimization
In this paper a new method is introduced for path planning of an autonomous vehicle. In this method, the environment is considered cluttered and with some uncertainty sources. Thus, the state of detected object should be estimated using an optimal filter. To do so, the state distribution is assumed Gaussian. Thus the state vector is estimated by a Kalman filter at each time step. The estimation...
متن کاملOptimization of Solution Regularized Long-wave Equation by Using Modified Variational Iteration Method
In this paper, a regularized long-wave equation (RLWE) is solved by using the Adomian's decomposition method (ADM) , modified Adomian's decomposition method (MADM), variational iteration method (VIM), modified variational iteration method (MVIM) and homotopy analysis method (HAM). The approximate solution of this equation is calculated in the form of series which its components are computed by ...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- The Journal of chemical physics
دوره 143 24 شماره
صفحات -
تاریخ انتشار 2015